To start we must first enter the interactive session The script is useful as a reference for future use. Īlthough we have a shell script that we can simply submit using sbatch, we will perform this analysis in interactive mode. Please copy the trimming directory from our shared folderĬp -r /scratch/courses/HITS-2018/trimming. JBrowse: Visualizing Data Quickly & Easily.Loading your own data in Seurat & Reanalyze a different dataset.Seurat part 3 – Data normalization and PCA.Exercise part4 – Alternative approach in R to plot and visualize the data.Deeptools2 computeMatrix and plotHeatmap using BioSAILs.Prerequisites, data summary and availability.Instructions to install R Modules on Dalma.Salmon & kallisto: Rapid Transcript Quantification for RNA-Seq Data.Over-Representation Analysis with ClusterProfiler.Gene Set Enrichment Analysis with ClusterProfiler.NGS Sequencing Technology and File Formats.Next-Generation Sequencing Analysis Resources.
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